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VAST Summer Program

Open Brain: An introduction to open-access tools for preprocessing, analysis, and visualization of brain MRI data

Speaker: Dr. Nárlon C Boa Sorte Silva

Time: July 9 at 4-5 pm EDT

Learning objectives:

  1. Learn about the most common open-access software to preprocess and analyze structural and functional MRI data, including FSL, FreeSurfer, ANTs, and Python. 

  2. Learn some basic data plotting functions using R (ggseg family packages), Python (nilearn software), and ANTS. 

  3. Learn tips and tricks to integrate different software and scale MRI data analysis pipeline to large datasets using scripting, containers, and clusters. 

VAST Summer Program:

The VAST Summer Program encompasses a series of workshops and seminars targeted to undergraduate trainees in the field of VCI to help with overall VCI knowledge, research skills, and networking. While targeted to undergraduates, all are welcome to attend. This series is coordinated by our VAST Trainee Curriculum Committee members. We'd encourage everyone to invite trainees in their labs. Sessions are organized biweekly for Tuesdays beginning at 4pm eastern time / 2pm mountain time / 1pm pacific time. The series will finish with our annual Summer Student Symposium at the end of August (date TBD but save Aug 20 at 12-3pm eastern in your calendar)! All trainees who attend at least 4 of the sessions, as well as the symposium, will be awarded a certificate of completion. All trainees are welcome to sign up and attend the program.

Link to Recording

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